About Grinder
Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms. Features shotgun or amplicon (e.g. 16S rRNA) read libraries omic
Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
Features
- shotgun or amplicon (e.g. 16S rRNA) read libraries
- omics support to generate genomic, transcriptomic, proteomic, metagenomic, metatranscriptomic or metaproteomic datasets
- arbitrary read length distribution and number of reads
- simulation of PCR and sequencing errors (chimeras, point mutations, homopolymers)
- support for paired-end (mate pair) datasets
- specific rank-abundance settings or manually given abundance for each genome, gene or protein
- creation of datasets with a given richness (alpha diversity)
- related datasets can share a variable number of genomes (beta diversity)
- modeling of the bias created by varying genome lengths or gene copy number
- profile mechanism to store preferred options
- available to biologists or power users through multiple interfaces: GUI, CLI and API
Previous Versions
Here you can find the changelog of Grinder since it was posted on our website on 2015-04-25 03:00:00.
The latest version is 0.5.4 and it was updated on 2024-04-22 16:00:47. See below the changes in each version.
Grinder version 0.5.4
Updated At: 2016-01-18
Grinder version Grinder-0.3.3
Updated At: 2011-03-03
Changes: Several fixes and updates
Disclaimer
External Download
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